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Article
An R package for multitrait and multienvironment data with the Item-based collaborative filtering algorithm
(Crop Science Society of America, 2018)
The Item-Based Collaborative Filtering for Multitrait and Multienvironment Data (IBCF.MTME) package was developed to implement the item-based collaborative filtering (IBCF) algorithm for continuous phenotypic data in the ...
Article
Genome-wide association mapping for resistance to leaf rust, stripe rust and tan spot in wheat reveals potential candidate genes
(Springer, 2018)
Leaf rust (LR), stripe rust (YR) and tan spot (TS) are some of the important foliar diseases in wheat (Triticum aestivum L.). To identify candidate resistance genes for these diseases in CIMMYT’s (International Maize and ...
Article
Resistance to spot blotch in two mapping populations of common wheat is controlled by multiple QTL of minor effects
(MDPI, 2018)
Spot blotch (SB) is an important fungal disease of wheat in South Asia and South America. Host resistance is regarded as an economical and environmentally friendly approach of controlling SB, and the inheritance of resistance ...
Article
Prospects and challenges of applied genomic selection-a new paradigm in breeding for grain yield in bread wheat
(Crop Science Society of America, 2018)
Genomic selection (GS) has been promising for increasing genetic gains in several species. Therefore, we evaluated the potential integration of GS for grain yield (GY) in bread wheat (Triticum aestivum L.) in CIMMYT's elite ...
Article
Comparison of models and whole-genome profiling approaches for genomic-enabled prediction of Septoria Tritici Blotch, Stagonospora Nodorum Blotch, and tan spot resistance in wheat
(Crop Science Society of America, 2017)
The leaf spotting diseases in wheat that include Septoria tritici blotch (STB) caused by Zymoseptoria tritici, Stagonospora nodorum blotch (SNB) caused by Parastagonospora nodorum, and tan spot (TS) caused by Pyrenophora ...
Article
New deep learning genomic-based prediction model for multiple traits with binary, ordinal, and continuous phenotypes
(Genetics Society of America, 2019)
Multiple-trait experiments with mixed phenotypes (binary, ordinal and continuous) are not rare in animal and plant breeding programs. However, there is a lack of statistical models that can exploit the correlation between ...
Article
Genetic dissection of grain zinc concentration in spring wheat for mainstreaming biofortification in CIMMYT wheat breeding
(Nature Publishing Group, 2018)
Wheat is an important staple that acts as a primary source of dietary energy, protein, and essential micronutrients such as iron (Fe) and zinc (Zn) for the world?s population. Approximately two billion people suffer from ...
Article
Genome-wide association mapping for leaf tip necrosis and pseudo-black chaff in relation to durable rust resistance in wheat
(Crop Science Society of America, 2015)
The partial rust resistance genes Lr34 and Sr2 have been used extensively in wheat (Triticum aestivum L.) improvement, as they confer exceptional durability. Interestingly, the resistance of Lr34 is associated with the ...
Article
Integrating genomic-enabled prediction and high-throughput phenotyping in breeding for climate-resilient bread wheat
(Springer, 2019)
Genomic selection and high-throughput phenotyping (HTP) are promising tools to accelerate breeding gains for high-yielding and climate-resilient wheat varieties. Hence, our objective was to evaluate them for predicting ...
Article
A singular value decomposition Bayesian multiple-trait and multiple-environment genomic model
(Springer Nature, 2019)
Today, breeders perform genomic-assisted breeding to improve more than one trait. However, frequently there are several traits under study at one time, and the implementation of current genomic multiple-trait and ...