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Article
An R Package for Bayesian analysis of multi-environment and multi-trait multi-environment data for genome-based prediction
(Genetics Society of America, 2019)
Evidence that genomic selection (GS) is a technology that is revolutionizing plant breeding continues to grow. However, it is very well documented that its success strongly depends on statistical models, which are used by ...
Article
New deep learning genomic-based prediction model for multiple traits with binary, ordinal, and continuous phenotypes
(Genetics Society of America, 2019)
Multiple-trait experiments with mixed phenotypes (binary, ordinal and continuous) are not rare in animal and plant breeding programs. However, there is a lack of statistical models that can exploit the correlation between ...
Article
A Bayesian genomic multi-output regressor stacking model for predicting multi-trait multi-environment plant breeding data
(Genetics Society of America, 2019)
In this paper we propose a Bayesian multi-output regressor stacking (BMORS) model that is a generalization of the multi-trait regressor stacking method. The proposed BMORS model consists of two stages: in the first stage, ...
Article
Deep kernel for genomic and near infrared predictions in multi-environment breeding trials
(Genetics Society of America, 2019)
Kernel methods are flexible and easy to interpret and have been successfully used in genomic-enabled prediction of various plant species. Kernel methods used in genomic prediction comprise the linear genomic best linear ...
Article
Maize responsiveness to Azospirillum brasilense: insights into genetic control, heterosis and genomic prediction
(Public Library of Science, 2019)
Article
Hyperspectral reflectance-derived relationship matrices for genomic prediction of grain yield in wheat
(Genetics Society of America, 2019)
Hyperspectral reflectance phenotyping and genomic selection are two emerging technologies that have the potential to increase plant breeding efficiency by improving prediction accuracy for grain yield. Hyperspectral cameras ...
Article
Genetic architecture of maize chlorotic mottle virus and maize lethal necrosis through GWAS, linkage analysis and genomic prediction in tropical maize germplasm
(Springer, 2019)
Maize lethal necrosis (MLN) is a serious threat to the food security of maize-growing smallholders in sub-Saharan Africa. The ability of the maize chlorotic mottle virus (MCMV) to interact with other members of the Potyviridae ...
Article
A singular value decomposition Bayesian multiple-trait and multiple-environment genomic model
(Springer Nature, 2019)
Today, breeders perform genomic-assisted breeding to improve more than one trait. However, frequently there are several traits under study at one time, and the implementation of current genomic multiple-trait and ...