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Article
The relative efficiency of two multistage linear phenotypic selection indices to predict the net genetic merit
(Crop Science Society of America (CSSA), 2019)
Multistage linear phenotypic selection indices predict the individual net genetic merit at different individual ages or stages and are cost-saving strategies for improving several traits. In a two-stage context, we compared ...
Article
An R Package for Bayesian analysis of multi-environment and multi-trait multi-environment data for genome-based prediction
(Genetics Society of America, 2019)
Evidence that genomic selection (GS) is a technology that is revolutionizing plant breeding continues to grow. However, it is very well documented that its success strongly depends on statistical models, which are used by ...
Article
New deep learning genomic-based prediction model for multiple traits with binary, ordinal, and continuous phenotypes
(Genetics Society of America, 2019)
Multiple-trait experiments with mixed phenotypes (binary, ordinal and continuous) are not rare in animal and plant breeding programs. However, there is a lack of statistical models that can exploit the correlation between ...
Article
Hybrid wheat prediction using genomic, pedigree, and environmental covariables interaction models
(Crop Science Society of America, 2019)
In this study, we used genotype × environment interactions (G×E) models for hybrid prediction, where similarity between lines was assessed by pedigree and molecular markers, and similarity between environments was accounted ...
Article
Article
Integrating genomic-enabled prediction and high-throughput phenotyping in breeding for climate-resilient bread wheat
(Springer, 2019)
Genomic selection and high-throughput phenotyping (HTP) are promising tools to accelerate breeding gains for high-yielding and climate-resilient wheat varieties. Hence, our objective was to evaluate them for predicting ...
Article
Optimum and decorrelated constrained multistage linear phenotypic selection indices theory
(Crop Science Society of America (CSSA), 2019)
Some authors have evaluated the unconstrained optimum and decorrelated multistage linear phenotypic selection indices (OMLPSI and DMLPSI, respectively) theory. We extended this index theory to the constrained multistage ...
Article
A Bayesian genomic multi-output regressor stacking model for predicting multi-trait multi-environment plant breeding data
(Genetics Society of America, 2019)
In this paper we propose a Bayesian multi-output regressor stacking (BMORS) model that is a generalization of the multi-trait regressor stacking method. The proposed BMORS model consists of two stages: in the first stage, ...
Article
Deep kernel for genomic and near infrared predictions in multi-environment breeding trials
(Genetics Society of America, 2019)
Kernel methods are flexible and easy to interpret and have been successfully used in genomic-enabled prediction of various plant species. Kernel methods used in genomic prediction comprise the linear genomic best linear ...
Article
Modeling genotype × environment interaction using a factor analytic model of on-farm wheat trials in the Yaqui Valley of Mexico
(American Society of Agronomy, 2019)
On‐farm trials of bread and durum wheat in the Yaqui Valley region of southern Sonora, Mexico, were established for three cropping seasons (2012, 2013, and 2015) using the management practices implemented by farmers. The ...