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Predictive genotype-phenotype relations using genetic diversity in African yam bean (Sphenostylis stenocarpa (Hochst. ex. A. Rich) Harms)

Creator: Aina, A.
Creator: Garcia Oliveira, A.L.
Creator: Ilori, C.
Creator: Chang, P.L.
Creator: Yusuf, M.
Creator: Oyatomi, O.
Creator: Abberton, M.
Creator: Potter, D.
Year: 2021
URI: https://hdl.handle.net/10883/21802
Language: English
Publisher: BioMed Central
Copyright: CIMMYT manages Intellectual Assets as International Public Goods. The user is free to download, print, store and share this work. In case you want to translate or create any other derivative work and share or distribute such translation/derivative work, please contact CIMMYT-Knowledge-Center@cgiar.org indicating the work you want to use and the kind of use you intend; CIMMYT will contact you with the suitable license for that purpose
Type: Article
Place of Publication: London (United Kingdom)
Volume: 21
DOI: 10.1186/s12870-021-03302-0
Keywords: Africa Yam Bean
Keywords: Restriction Site-Associated DNA Sequencing
Description: Background: African Yam Bean (AYB) is an understudied and underutilized tuberous legume of tropical West and Central African origin. In these geographical regions, both seeds and tubers of AYB are important components of people’s diets and a potential target as a nutritional security crop. The understanding of the genetic diversity among AYB accessions is thus an important component for both conservation and potential breeding programs. Results: In this study, 93 AYB accessions were obtained from the International Institute of Tropical Agriculture (IITA) genebank and genotyped using 3722 SNP markers based on Restriction site-Associated DNA sequencing (RAD-Seq). Genetic data was analysed using multiple clustering methods for better understanding the distribution of genetic diversity across the population. Substantial genetic variability was observed in the present set of AYB accessions and different methodologies demonstrated that these accessions are divided into three to four main groups. The accessions were also analysed for important agronomic traits and successfully associated with their genetic clusters where great majority of accessions shared a similar phenotype. Conclusions: To our knowledge, this is the first study on predicting genotypic-phenotypic diversity relationship analysis in AYB. From a breeding perspective, we were able to identify specific diverse groups with precise phenotype such as seed or both seed and tuber yield purpose accessions. These results provide novel and important insights to support the utilization of this germplasm in AYB breeding programs.
Agrovoc: PACHYRHIZUS EROSUS
Agrovoc: GENETIC DIVERSITY
Agrovoc: SINGLE NUCLEOTIDE POLYMORPHISM
Agrovoc: GENOTYPING
Agrovoc: PHENOTYPES
Related Datasets: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA389330
Related Datasets: https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-021-03302-0#Sec18
ISSN: 1471-2229
Journal: BMC Plant Biology
Article number: 547


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  • Genetic Resources
    Genetic Resources including germplasm collections, wild relatives, genotyping, genomics, and IP

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