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Improving wheat yield prediction using secondary traits and high-density phenotyping under heat-stressed environments

Creator: Rahman, M.M.
Creator: Crain, J.L.
Creator: Haghighattalab, A.
Creator: Singh, R.P.
Creator: Poland, J.A.
Year: 2021
URI: https://hdl.handle.net/10883/21701
Language: English
Publisher: Frontiers
Copyright: CIMMYT manages Intellectual Assets as International Public Goods. The user is free to download, print, store and share this work. In case you want to translate or create any other derivative work and share or distribute such translation/derivative work, please contact CIMMYT-Knowledge-Center@cgiar.org indicating the work you want to use and the kind of use you intend; CIMMYT will contact you with the suitable license for that purpose
Type: Article
Place of Publication: Switzerland
Volume: 12
DOI: 10.3389/fpls.2021.633651
Keywords: Canopy Temperature
Keywords: Grain Yield Prediction
Keywords: High Throughput Phenotyping
Description: A primary selection target for wheat (Triticum aestivum) improvement is grain yield. However, the selection for yield is limited by the extent of field trials, fluctuating environments, and the time needed to obtain multiyear assessments. Secondary traits such as spectral reflectance and canopy temperature (CT), which can be rapidly measured many times throughout the growing season, are frequently correlated with grain yield and could be used for indirect selection in large populations particularly in earlier generations in the breeding cycle prior to replicated yield testing. While proximal sensing data collection is increasingly implemented with high-throughput platforms that provide powerful and affordable information, efficient and effective use of these data is challenging. The objective of this study was to monitor wheat growth and predict grain yield in wheat breeding trials using high-density proximal sensing measurements under extreme terminal heat stress that is common in Bangladesh. Over five growing seasons, we analyzed normalized difference vegetation index (NDVI) and CT measurements collected in elite breeding lines from the International Maize and Wheat Improvement Center at the Regional Agricultural Research Station, Jamalpur, Bangladesh. We explored several variable reduction and regularization techniques followed by using the combined secondary traits to predict grain yield. Across years, grain yield heritability ranged from 0.30 to 0.72, with variable secondary trait heritability (0.0–0.6), while the correlation between grain yield and secondary traits ranged from −0.5 to 0.5. The prediction accuracy was calculated by a cross-fold validation approach as the correlation between observed and predicted grain yield using univariate and multivariate models. We found that the multivariate models resulted in higher prediction accuracies for grain yield than the univariate models. Stepwise regression performed equal to, or better than, other models in predicting grain yield. When incorporating all secondary traits into the models, we obtained high prediction accuracies (0.58–0.68) across the five growing seasons. Our results show that the optimized phenotypic prediction models can leverage secondary traits to deliver accurate predictions of wheat grain yield, allowing breeding programs to make more robust and rapid selections.
Agrovoc: CANOPY
Agrovoc: GRAIN
Agrovoc: YIELDS
Agrovoc: HEAT STRESS
Agrovoc: PHENOTYPES
Agrovoc: NORMALIZED DIFFERENCE VEGETATION INDEX
Agrovoc: WHEAT
Related Datasets: https://doi.org/10.5061/dryad.vdncjsxrz
Related Datasets: https://figshare.com/collections/Improving_Wheat_Yield_Prediction_Using_Secondary_Traits_and_High-Density_Phenotyping_Under_Heat-Stressed_Environments/5634952
ISSN: 1664-462X
Journal: Frontiers in Plant Science
Article number: 633651


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  • Wheat
    Wheat - breeding, phytopathology, physiology, quality, biotech

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