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Genome-wide association analysis of stripe rust resistance in modern Chinese wheat

Creator: Mengjie Jia
Creator: Lijun Yang
Creator: Wei Zhang
Creator: Rosewarne, G.M
Creator: Junhui Li
Creator: Enian Yang
Creator: Ling Chen
Creator: Wenxue Wang
Creator: Yike Liu
Creator: Hanwen Tong
Creator: Weijie He
Creator: Yuqing Zhang
Creator: Zhanwang Zhu
Creator: Chunbao Gao
Year: 2020
URI: https://hdl.handle.net/10883/21032
Language: English
Publisher: BioMed Central
Copyright: CIMMYT manages Intellectual Assets as International Public Goods. The user is free to download, print, store and share this work. In case you want to translate or create any other derivative work and share or distribute such translation/derivative work, please contact CIMMYT-Knowledge-Center@cgiar.org indicating the work you want to use and the kind of use you intend; CIMMYT will contact you with the suitable license for that purpose
Type: Article
Place of Publication: London (United Kingdom)
Volume: 20
DOI: 10.1186/s12870-020-02693-w
Description: Background. Stripe rust (yellow rust) is a significant disease for bread wheat (Triticum aestivum L.) worldwide. A genome-wide association study was conducted on 240 Chinese wheat cultivars and elite lines genotyped with the wheat 90 K single nucleotide polymorphism (SNP) arrays to decipher the genetic architecture of stripe rust resistance in Chinese germplasm. Results. Stripe rust resistance was evaluated at the adult plant stage in Pixian and Xindu in Sichuan province in the 2015–2016 cropping season, and in Wuhan in Hubei province in the 2013–2014, 2016–2017 and 2018–2019 cropping seasons. Twelve stable loci for stripe rust resistance were identified by GWAS using TASSEL and GAPIT software. These loci were distributed on chromosomes 1B, 1D, 2A, 2B, 3A, 3B, 4B (3), 4D, 6D, and 7B and explained 3.6 to 10.3% of the phenotypic variation. Six of the loci corresponded with previously reported genes/QTLs, including Sr2/Yr30/Lr27, while the other six (QYr.hbaas-1BS, QYr.hbaas-2BL, QYr.hbaas-3AL, QYr.hbaas-4BL.3, QYr.hbaas-4DL, and QYr.hbaas-6DS) are probably novel. The results suggest high genetic diversity for stripe rust resistance in this population. The resistance alleles of QYr.hbaas-2AS, QYr.hbaas-3BS, QYr.hbaas-4DL, and QYr.hbaas-7BL were rare in the present panel, indicating their potential use in breeding for stripe rust resistance in China. Eleven penta-primer amplification refractory mutation system (PARMS) markers were developed from SNPs significantly associated with seven mapped QTLs. Twenty-seven genes were predicted for mapped QTLs. Six of them were considered as candidates for their high relative expression levels post-inoculation. Conclusion. The resistant germplasm, mapped QTLs, and PARMS markers developed in this study are resources for enhancing stripe rust resistance in wheat breeding.
Agrovoc: GENETIC MARKERS
Agrovoc: SINGLE NUCLEOTIDE POLYMORPHISM
Agrovoc: TRITICUM AESTIVUM
Agrovoc: RUSTS
Related Datasets: https://www.ebi.ac.uk/ena/data/view/PRJEB36125
Related Datasets: https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-020-02693-w#Sec22
ISSN: 1471-2229
Journal: BMC Plant Biology
Article number: 491


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  • Wheat
    Wheat - breeding, phytopathology, physiology, quality, biotech

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