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Modeling genotype × environment interaction using a factor analytic model of on-farm wheat trials in the Yaqui Valley of Mexico

Author: Vargas Hernández, M.
Author: Ortíz-Monasterios, I.
Author: Perez-Rodriguez, P.
Author: Montesinos-Lopez, O.A.
Author: Montesinos-Lopez, A.
Author: Burgueño, J.
Author: Crossa, J.
Year: 2019
ISSN: 1435-0645
URI: https://hdl.handle.net/10883/20512
Abstract: On‐farm trials of bread and durum wheat in the Yaqui Valley region of southern Sonora, Mexico, were established for three cropping seasons (2012, 2013, and 2015) using the management practices implemented by farmers. The trials comprised bread and durum wheats that were sown together under two regimes: full irrigation and reduced irrigation. The experiments were replicated and unbalanced, as several bread wheat and durum wheat lines were not repeated during the 3 yr. We studied the interaction between bread and durum wheats and environments (farmer‐irrigation‐year combinations). To model the crossover interaction (COI) and the non‐COI components of the genotype × environment interaction (G×E) between the wheat lines and the environments, we used a linear mixed model with the Factor Analytic (FA) model, a parsimonious model that is similar to the multiple regression of lines on environments based on latent variables. In this case, we modeled the combined effects of the wheat lines and their interactions with the farmer‐irrigation‐year combinations. Results show the separation of the dynamic (unpredictable) component of the interaction (year) from the more static component of the interaction due to farmer and irrigation level. The FA model offers a useful alternative for modeling interactions in agronomy‐breeding experiments to dissect and account for complex interactions that are common in agriculture experiments. Furthermore, stable wheat lines across all environments were also detected, as well the environments that caused most of the interaction.
Format: PDF
Language: English
Publisher: American Society of Agronomy
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Type: Article
Place of Publication: USA
Pages: 1-11
Issue: 1
Volume: 111
DOI: 10.2134/agronj2018.06.0361
Country of Focus: MEXICO
Agrovoc: HARD WHEAT
Agrovoc: SOFT WHEAT
Agrovoc: FACTOR ANALYSIS
Agrovoc: GENOTYPE ENVIRONMENT INTERACTION
Journal: Agronomy Journal


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  • Genetic Resources
    Genetic Resources including germplasm collections, wild relatives, genotyping, genomics, and IP
  • Sustainable Intensification
    Sustainable intensification agriculture including topics on cropping systems, agronomy, soil, mechanization, precision agriculture, etc.

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