Show simple item record

Combining high-throughput phenotyping and genomic information to increase prediction and selection accuracy in wheat breeding

Author: Crain, J. L.
Author: Mondal, S.
Author: Rutkoski, J.
Author: Singh, R.P.
Author: Poland, J.
Year: 2018
URI: https://hdl.handle.net/10883/19353
Abstract: Genomics and phenomics have promised to revolutionize the field of plant breeding. The integration of these two fields has just begun and is being driven through big data by advances in next-generation sequencing and developments of field-based high-throughput phenotyping (HTP) platforms. Each year the International Maize and Wheat Improvement Center (CIMMYT) evaluates tens-of-thousands of advanced lines for grain yield across multiple environments. To evaluate how CIMMYT may utilize dynamic HTP data for genomic selection (GS), we evaluated 1170 of these advanced lines in two environments, drought (2014, 2015) and heat (2015). A portable phenotyping system called ‘Phenocart’ was used to measure normalized difference vegetation index and canopy temperature simultaneously while tagging each data point with precise GPS coordinates. For genomic profiling, genotyping-by-sequencing (GBS) was used for marker discovery and genotyping. Several GS models were evaluated utilizing the 2254 GBS markers along with over 1.1 million phenotypic observations. The physiological measurements collected by HTP, whether used as a response in multivariate models or as a covariate in univariate models, resulted in a range of 33% below to 7% above the standard univariate model. Continued advances in yield prediction models as well as increasing data generating capabilities for both genomic and phenomic data will make these selection strategies tractable for plant breeders to implement increasing the rate of genetic gain.
Format: PDF
Language: English
Publisher: Crop Science Society of America
Copyright: CIMMYT manages Intellectual Assets as International Public Goods. The user is free to download, print, store and share this work. In case you want to translate or create any other derivative work and share or distribute such translation/derivative work, please contact CIMMYT-Knowledge-Center@cgiar.org indicating the work you want to use and the kind of use you intend; CIMMYT will contact you with the suitable license for that purpose.
Type: Article
Place of Publication: Madison, WI
Issue: 1:170043
Volume: 11
DOI: 10.3835/plantgenome2017.05.0043
Keywords: Wheat Breeding
Keywords: High Throughput Phenotyping
Keywords: Genomic Selection
Keywords: Yield Prediction Modeling
Agrovoc: WHEAT
Agrovoc: GENOMICS
Agrovoc: YIELD FORECASTING
Related Datasets: https://doi.org/10.5061/dryad.7f138
Journal: The Plant Genome


Files in this item

Thumbnail

This item appears in the following Collection(s)

  • Wheat
    Wheat - breeding, phytopathology, physiology, quality, biotech

Show simple item record