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Article
Genomic prediction in CIMMYT maize and wheat breeding programs
(Springer Nature, 2014)
Genomic selection (GS) has been implemented in animal and plant species, and is regarded as a useful tool for accelerating genetic gains. Varying levels of genomic prediction accuracy have been obtained in plants, depending ...
Article
Genomic prediction of genotype x environment interaction kernel regression models
(Crop Science Society of America, 2016)
In genomic selection (GS), genotype × environment interaction (G × E) can be modeled by a marker × environment interaction (M × E). The G × E may be modeled through a linear kernel or a nonlinear (Gaussian) kernel. In this ...
Article
Genomic-enabled prediction in maize using kernel models with genotype x environment interaction
(Genetics Society of America, 2017)
Multi-environment trials are routinely conducted in plant breeding to select candidates for the next selection cycle. In this study, we compare the prediction accuracy of four developed genomic-enabled prediction models: ...
Article
Bayesian genomic prediction with genotype x environment interaction kernel models
(Genetics Society of America, 2017)
The phenomenon of genotype · environment (G · E) interaction in plant breeding decreases selection accuracy, thereby negatively affecting genetic gains. Several genomic prediction models incorporating G · E have been ...
Article
A reaction norm model for genomic selection using high-dimensional genomic and environmental data
(Springer, 2013)
In most agricultural crops the effects of genes on traits are modulated by environmental conditions, leading to genetic by environmental interaction (G × E). Modern genotyping technologies allow characterizing genomes in ...
Article
Genomic prediction of gene bank wheat landraces
(Genetics Society of America, 2016)
This study examines genomic prediction within 8416 Mexican landrace accessions and 2403 Iranian landrace accessions stored in gene banks. The Mexican and Iranian collections were evaluated in separate field trials, including ...
Article
Single-step genomic and pedigree genotype x environment interaction models for predicting wheat lines in international environments
(Crop Science Society of America, 2017)
Genomic prediction models have been commonly used in plant breeding but only in reduced datasets comprising a few hundred genotyped individuals. However, pedigree information for an entire breeding population is frequently ...
Article
Multivariate bayesian analysis of on-farm trials with multiple-trait and multiple-environment data
(American Society of Agronomy, 2019)
Article
Modeling genotype × environment interaction using a factor analytic model of on-farm wheat trials in the Yaqui Valley of Mexico
(American Society of Agronomy, 2019)
On‐farm trials of bread and durum wheat in the Yaqui Valley region of southern Sonora, Mexico, were established for three cropping seasons (2012, 2013, and 2015) using the management practices implemented by farmers. The ...
Article
Deep kernel for genomic and near infrared predictions in multi-environment breeding trials
(Genetics Society of America, 2019)
Kernel methods are flexible and easy to interpret and have been successfully used in genomic-enabled prediction of various plant species. Kernel methods used in genomic prediction comprise the linear genomic best linear ...