Now showing items 1-10 of 29
Genomic prediction in maize breeding populations with genotyping-by sequencing
(Genetics Society of America, 2013)
Genotyping-by-sequencing (GBS) technologies have proven capacity for delivering large numbers of marker genotypes with potentially less ascertainment bias than standard single nucleotide polymorphism (SNP) arrays. Therefore, ...
Genomic-enabled prediction based on molecular markers and pedigree using the Bayesian linear regression package in R
(Crop Science Society of America, 2010)
The availability of dense molecular markers has made possible the use of genomic selection in plant and animal breeding. However, models for genomic selection pose several computational and statistical challenges and require ...
Regularized selection indices for breeding value prediction using hyper-spectral image data
(Nature Publishing Group, 2020)
A benchmarking between deep learning, support vector machine and bayesian threshold best linear unbiased prediction for predicting ordinal traits in plant breeding
(Genetics Society of America, 2019)
Genomic selection is revolutionizing plant breeding. However, still lacking are better statistical models for ordinal phenotypes to improve the accuracy of the selection of candidate genotypes. For this reason, in this ...
User's guide for spatial analysis of field variety trials using ASREML
This manual describes an approach to the spatial analysis of field experiments based on the software package AS residual maximum likelihood (ASREML; Gilmour et al. 1999). It describes common sources of spatial variation ...
The AMMI analysis and graphing the biplot
Genomic-enabled prediction with classification algorithms
(Springer Nature, 2014)
Pearson’s correlation coefficient (ρ) is the most commonly reported metric of the success of prediction in genomic selection (GS). However, in real breeding ρ may not be very useful for assessing the quality of the regression ...
Extending the marker x environment interaction model for genomic-enabled prediction and genome-wide association analysis in durum wheat
(Crop Science Society of America (CSSA), 2016)
The marker ´ environment interaction (M´E) genomic model can be used to generate predictions for untested individuals and identify genomic regions in which effects are stable across environments and others that show ...
A bayesian poisson-lognormal model for count data for multiple-trait multiple-environment genomic-enabled prediction
(Genetics Society of America, 2017)
When a plant scientist wishes to make genomic-enabled predictions of multiple traits measured in multiple individuals in multiple environments, the most common strategy for performing the analysis is to use a single trait ...
Sashaydiall: A SAS program for hayman’s diallel analysis
(Crop Science Society of America (CSSA), 2018)
Different methods of diallel crossing are commonly used in plant breeding. The diallel cross analysis method proposed by Hayman is particularly useful because it provides information, among others, on additive and dominance ...